Publications: Manpreet S Katari

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  • Affiliation: Clinical Associate Professor of Biology, New York University
  • Google Scholar ID: wn2TDMEAAAAJ
  • Total Publications: 108

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Title Year Citations Score
Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1
Proceedings of the National Academy of Sciences 105 (12), 4939-4944, 2008
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2008 434 93.0%
Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1
Proceedings of the National Academy of Sciences 105 (12), 4939-4944, 2008
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2008 408 93.0%
Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1
Proceedings of the National Academy of Sciences 105 (12), 4939-4944, 2008
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2008 434 93.0%
Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1
Proceedings of the National Academy of Sciences 105 (12), 4939-4944, 2008
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2008 408 93.0%
VirtualPlant: a software platform to support systems biology research
Plant physiology 152 (2), 500-515, 2010
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2010 294 91.0%
VirtualPlant: a software platform to support systems biology research
Plant physiology 152 (2), 500-515, 2010
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2010 313 91.0%
VirtualPlant: a software platform to support systems biology research
Plant physiology 152 (2), 500-515, 2010
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2010 294 90.3%
VirtualPlant: a software platform to support systems biology research
Plant physiology 152 (2), 500-515, 2010
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2010 313 90.3%
ConnecTF: a platform to integrate transcription factor–gene interactions and validate regulatory networks
Plant physiology 185 (1), 49-66, 2021
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2021 33 83.9%
ConnecTF: A platform to integrate transcription factor–gene interactions and validate regulatory networks
Plant physiology 185 (1), 49-66, 2021
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2021 51 83.9%
The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants
Genome Biology 16 (1), 79, 2015
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2015 132 83.6%
The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants
Genome Biology 16 (1), 1-15, 2015
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2015 104 83.6%
The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants
Genome Biology 16 (1), 79, 2015
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2015 132 83.6%
The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants
Genome Biology 16 (1), 1-15, 2015
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2015 104 83.6%
A functional phylogenomic view of the seed plants
PLoS genetics 7 (12), e1002411, 2011
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2011 171 83.4%
A functional phylogenomic view of the seed plants
PLoS genetics 7 (12), e1002411, 2011
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2011 167 83.4%
A functional phylogenomic view of the seed plants
PLoS genetics 7 (12), e1002411, 2011
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2011 171 83.4%
A functional phylogenomic view of the seed plants
PLoS genetics 7 (12), e1002411, 2011
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2011 167 83.4%
Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
BMC genomics 14 (1), 701, 2013
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2013 119 79.5%
Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
BMC genomics 14 (1), 1-15, 2013
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2013 105 79.5%
Plasticity regulators modulate specific root traits in discrete nitrogen environments
PLoS genetics 9 (9), e1003760, 2013
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2013 105 76.9%
Plasticity regulators modulate specific root traits in discrete nitrogen environments
PLoS genetics 9 (9), e1003760, 2013
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2013 99 76.9%
Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
BMC genomics 14 (1), 701, 2013
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2013 119 76.9%
Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
BMC genomics 14 (1), 1-15, 2013
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2013 105 76.9%
Molecular Basis of Disease Resistance in Banana Progenitor Musa balbisiana against Xanthomonas campestris pv. musacearum
Scientific reports 9 (1), 7007, 2019
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2019 55 75.4%
Molecular Basis of Disease Resistance in Banana Progenitor Musa balbisiana against Xanthomonas campestris pv. musacearum
Scientific reports 9 (1), 7007, 2019
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2019 37 75.4%
ConnecTF: a platform to integrate transcription factor–gene interactions and validate regulatory networks
Plant physiology 185 (1), 49-66, 2021
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2021 33 75.1%
ConnecTF: A platform to integrate transcription factor–gene interactions and validate regulatory networks
Plant physiology 185 (1), 49-66, 2021
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2021 51 75.1%
QTL Mapping for Pest and Disease Resistance in Cassava and Coincidence of Some QTL with Introgression Regions Derived from Manihot glaziovii
Frontiers in plant science 8, 1168, 2017
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2017 57 73.2%
QTL Mapping for Pest and Disease Resistance in Cassava and Coincidence of Some QTL with Introgression Regions Derived from Manihot glaziovii
Frontiers in plant science 8, 1168, 2017
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2017 67 73.2%
QTL Mapping for Pest and Disease Resistance in Cassava and Coincidence of Some QTL with Introgression Regions Derived from Manihot glaziovii
Frontiers in plant science 8, 1168, 2017
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2017 57 73.2%
QTL Mapping for Pest and Disease Resistance in Cassava and Coincidence of Some QTL with Introgression Regions Derived from Manihot glaziovii
Frontiers in plant science 8, 1168, 2017
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2017 67 73.2%
Expressed sequence tag analysis in Cycas, the most primitive living seed plant
Genome Biology 4, 1-11, 2003
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2003 100 71.3%
Expressed sequence tag analysis in Cycas, the most primitive living seed plant
Genome Biology 4 (12), R78, 2003
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2003 111 71.3%
Adjuvant crizotinib in high-risk uveal melanoma following definitive therapy
Frontiers in oncology 12, 976837, 2022
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2022 17 70.8%
Adjuvant crizotinib in high-risk uveal melanoma following definitive therapy
Frontiers in oncology 12, 976837, 2022
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2022 3 70.8%
QTL associated with resistance to cassava brown streak and cassava mosaic diseases in a bi-parental cross of two Tanzanian farmer varieties, Namikonga and Albert
Theoretical and Applied Genetics 130, 2069-2090, 2017
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2017 49 70.5%
QTL associated with resistance to cassava brown streak and cassava mosaic diseases in a bi-parental cross of two Tanzanian farmer varieties, Namikonga and Albert
Theoretical and Applied Genetics 130 (10), 2069-2090, 2017
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2017 60 70.5%
A time series transcriptome analysis of cassava (Manihot esculenta Crantz) varieties challenged with Ugandan cassava brown streak virus
Scientific reports 7 (1), 9747, 2017
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2017 55 68.3%
A time series transcriptome analysis of cassava (Manihot esculenta Crantz) varieties challenged with Ugandan cassava brown streak virus
Scientific reports 7 (1), 9747, 2017
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2017 43 68.3%
Modeling the global effect of the basic-leucine zipper transcription factor 1 (bZIP1) on nitrogen and light regulation in Arabidopsis
BMC systems biology 4 (1), 1-11, 2010
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2010 66 67.5%
Modeling the global effect of the basic-leucine zipper transcription factor 1 (bZIP1) on nitrogen and light regulation in Arabidopsis
BMC systems biology 4 (1), 111, 2010
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2010 81 67.5%
TCF7L1 modulates colorectal cancer growth by inhibiting expression of the tumor-suppressor gene EPHB3
Scientific Reports 6 (1), 28299, 2016
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2016 44 67.3%
TCF7L1 modulates colorectal cancer growth by inhibiting expression of the tumor-suppressor gene EPHB3
Scientific Reports 6 (1), 28299, 2016
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2016 57 67.3%
WRKY1 mediates transcriptional regulation of light and nitrogen signaling pathways
Plant physiology 181 (3), 1371-1388, 2019
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2019 37 65.4%
WRKY1 mediates transcriptional regulation of light and nitrogen signaling pathways
Plant physiology 181 (3), 1371-1388, 2019
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2019 24 65.4%
Cross-species network analysis uncovers conserved nitrogen-regulated network modules in rice
Plant physiology 168 (4), 1830-1843, 2015
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2015 50 63.7%
Cross-species network analysis uncovers conserved nitrogen-regulated network modules in rice
Plant physiology 168 (4), 1830-1843, 2015
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2015 54 63.7%
The impact of outgroup choice and missing data on major seed plant phylogenetics using genome-wide EST data
PLoS One 4 (6), e5764, 2009
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2009 66 63.6%
The impact of outgroup choice and missing data on major seed plant phylogenetics using genome-wide EST data
PLoS One 4 (6), e5764, 2009
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2009 69 63.6%
The impact of outgroup choice and missing data on major seed plant phylogenetics using genome-wide EST data
PLoS One 4 (6), e5764, 2009
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2009 66 63.6%
The impact of outgroup choice and missing data on major seed plant phylogenetics using genome-wide EST data
PLoS One 4 (6), e5764, 2009
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2009 69 63.6%
An integrated genetic, genomic and systems approach defines gene networks regulated by the interaction of light and carbon signaling pathways in Arabidopsis
BMC systems biology 2 (1), 31, 2008
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2008 71 63.5%
An integrated genetic, genomic and systems approach defines gene networks regulated by the interaction of light and carbon signaling pathways in Arabidopsis
BMC systems biology 2, 1-19, 2008
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2008 67 63.5%
Evolution and microsynteny of the apyrase gene family in three legume genomes
Molecular Genetics and Genomics 270 (4), 347-361, 2003
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2003 66 60.3%
Evolution and microsynteny of the apyrase gene family in three legume genomes
Molecular Genetics and Genomics 270, 347-361, 2003
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2003 63 60.3%
Sungear: interactive visualization and functional analysis of genomic datasets
Bioinformatics 23 (2), 259-261, 2007
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2007 55 58.7%
Sungear: interactive visualization and functional analysis of genomic datasets
Bioinformatics 23 (2), 259-261, 2007
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2007 58 58.7%
Sungear: interactive visualization and functional analysis of genomic datasets
Bioinformatics 23 (2), 259-261, 2007
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2007 55 58.7%
Sungear: interactive visualization and functional analysis of genomic datasets
Bioinformatics 23 (2), 259-261, 2007
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2007 58 58.7%
EST analysis in Ginkgo biloba: an assessment of conserved developmental regulators and gymnosperm specific genes
BMC genomics 6 (1), 1-10, 2005
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2005 48 54.9%
EST analysis in Ginkgo biloba: an assessment of conserved developmental regulators and gymnosperm specific genes
BMC genomics 6 (1), 143, 2005
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2005 49 54.9%
ESTimating plant phylogeny: lessons from partitioning
BMC Evolutionary Biology 6 (1), 48, 2006
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2006 40 51.2%
ESTimating plant phylogeny: lessons from partitioning
BMC Evolutionary Biology 6 (1), 1-15, 2006
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2006 41 51.2%
Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana
Genome research 15 (4), 496-504, 2005
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2005 38 49.8%
Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana
Genome research 15 (4), 496-504, 2005
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2005 35 49.8%
Using phylogenomic patterns and gene ontology to identify proteins of importance in plant evolution
Genome biology and evolution 2, 225-239, 2010
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2010 33 47.2%
Using phylogenomic patterns and gene ontology to identify proteins of importance in plant evolution
Genome biology and evolution 2, 225-239, 2010
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2010 31 47.2%
An International Bioinformatics Infrastructure to Underpin the Arabidopsis Community
The Plant Cell 22 (8), 2530-2536, 2010
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2010 31 46.6%
An International Bioinformatics Infrastructure to Underpin the Arabidopsis Community
The Plant Cell 22 (8), 2530-2536, 2010
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2010 32 46.6%
An International Bioinformatics Infrastructure to Underpin the Arabidopsis Community
The Plant Cell 22 (8), 2530-2536, 2010
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2010 31 46.6%
An International Bioinformatics Infrastructure to Underpin the Arabidopsis Community
The Plant Cell 22 (8), 2530-2536, 2010
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2010 32 46.6%
Identification of mesoderm development (mesd) candidate genes by comparative mapping and genome sequence analysis
Genomics 72 (1), 88-98, 2001
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2001 28 44.7%
Identification of mesoderm development (mesd) candidate genes by comparative mapping and genome sequence analysis
Genomics 72 (1), 88-98, 2001
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2001 28 44.7%
Genetic analysis and QTL mapping for multiple biotic stress resistance in cassava
PLoS One 15 (8), e0236674, 2020
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2020 14 43.3%
Genetic analysis and QTL mapping for multiple biotic stress resistance in cassava
Plos one 15 (8), e0236674, 2020
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2020 11 43.3%
Perspectives on ecological and evolutionary systems biology
ANNUAL PLANT REVIEWS VOLUME 35, 331, 2009
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2009 26 42.7%
Perspectives on ecological and evolutionary systems biology
ANNUAL PLANT REVIEWS VOLUME 35, 331, 2009
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2009 26 42.7%
Statistics is easy: case studies on real scientific datasets
Morgan & Claypool Publishers, 2021
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2021 1 41.3%
Statistics is easy: case studies on real scientific datasets
Morgan & Claypool Publishers, 2021
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2021 10 41.3%
Systems biology: principles and applications in plant research
Annual Plant Reviews Volume 35: Plant Systems Biology 35, 1-40, 2009
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2009 23 41.2%
Systems biology: principles and applications in plant research
Annual Plant Reviews Volume 35: Plant Systems Biology 35, 1-40, 2009
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2009 24 41.2%
Gangliosides of monocyte-derived macrophages of adults with advanced HIV infection show reduced surface accessibility
Journal of leukocyte biology 64 (3), 311-321, 1998
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1998 8 25.5%
Gangliosides of monocyte-derived macrophages of adults with advanced HIV infection show reduced surface accessibility
Journal of leukocyte biology 64 (3), 311-321, 1998
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1998 8 25.5%
The genome of the Wollemi pine, a critically endangered “living fossil” unchanged since the Cretaceous, reveals extensive ancient transposon activity
bioRxiv, 2023
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2023 2 21.8%
The genome of the Wollemi pine, a critically endangered “living fossil” unchanged since the Cretaceous, reveals extensive ancient transposon activity
bioRxiv, 2023
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2023 0 21.8%
An Optimized Procedure for Proteomic Analysis of Extracellular Vesicles Using In-Stage Tip Digestion and DIA LC-MS/MS: Application to Liquid Biopsy in Cancer
Clinical Applications of Mass Spectrometry in Biomolecular Analysis: Methods …, 2022
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2022 1 21.0%
An optimized procedure for proteomic analysis of extracellular vesicles using in-stage tip digestion and DIA LC-MS/MS: Application to liquid biopsy in cancer
Clinical Applications of Mass Spectrometry in Biomolecular Analysis: Methods …, 2022
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2022 3 21.0%
In silico evaluation of predicted regulatory interactions in Arabidopsis thaliana
BMC bioinformatics 10 (1), 1-15, 2009
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2009 6 20.3%
In Silico Evaluation of Predicted Regulatory Interactions in Arabidopsis thaliana
BMC bioinformatics 10 (1), 435, 2009
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2009 5 20.3%
Transgenic plants and a transient transformation system for genome-wide transcription factor target discovery
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2016 6 18.8%
Transgenic plants and a transient transformation system for genome-wide transcription factor target discovery
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2016 0 18.8%
Transgenic plants and a transient transformation system for genome-wide transcription factor target discovery
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2016 6 18.8%
Transgenic plants and a transient transformation system for genome-wide transcription factor target discovery
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2016 0 18.8%
Using the Integrated Genome Viewer to reveal amplicon‐derived polymorphism enriched at the phenylthiocarbamide locus in the teaching lab
Biochemistry and Molecular Biology Education 49 (3), 361-371, 2021
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2021 2 8.2%
Using the Integrated Genome Viewer to reveal amplicon‐derived polymorphism enriched at the phenylthiocarbamide locus in the teaching lab
Biochemistry and Molecular Biology Education 49 (3), 361-371, 2021
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2021 1 8.2%
Breast Cancer Classification
Statistics is Easy: Case Studies on Real Scientific Datasets, 23-41, 2021
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2021 2 8.2%
Breast Cancer Classification
Statistics is Easy: Case Studies on Real Scientific Datasets, 23-41, 2021
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2021 2 8.2%
A systems approach to nitrogen networks and the “VirtualPlant”
Developmental Biology 1 (295), 327, 2006
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2006 2 6.9%
A systems approach to nitrogen networks and the “VirtualPlant”
Developmental Biology 295 (1), 327, 2006
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2006 2 6.9%
ConnecTF: A platform to build gene networks by integrating transcription factor-target gene interactions
bioRxiv, 2020.07. 07.191627, 2020
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2020 1 0.0%
ConnecTF: A platform to build gene networks by integrating transcription factor-target gene interactions
bioRxiv, 2020.07. 07.191627, 2020
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2020 1 0.0%
Building High-Confidence Gene Regulatory Networks by Integrating Validated TF–Target Gene Interactions Using ConnecTF
Plant Gene Regulatory Networks: Methods and Protocols, 195-220, 2023
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2023 0 0.0%
Building high-confidence gene regulatory networks by integrating validated TF–target gene interactions using ConnecTF
Plant Gene Regulatory Networks: Methods and Protocols, 195-220, 2023
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2023 1 0.0%
Nickel-induced transcriptional memory in lung epithelial cells promotes interferon signaling upon nicotine exposure
Toxicology and Applied Pharmacology 481, 116753, 2023
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2023 0 0.0%
Nickel-induced transcriptional memory in lung epithelial cells promotes interferon signaling upon nicotine exposure
Toxicology and applied pharmacology 481, 116753, 2023
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2023 1 0.0%
Nickel-induced transcriptional memory in lung epithelial cells promotes interferon signaling upon nicotine exposure
Toxicology and Applied Pharmacology 481, 116753, 2023
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2023 0 0.0%
Nickel-induced transcriptional memory in lung epithelial cells promotes interferon signaling upon nicotine exposure
Toxicology and applied pharmacology 481, 116753, 2023
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2023 1 0.0%